–> 324 ifcls = J.class_for_name(“”)ģ25 scls = env.find_class(“java/lang/String”) home/jagadish/yeast_web/anaconda3/envs/cellprofiler/lib/python2.7/site-packages/cellprofiler/modules/images.pyc in prepare_run(self, workspace) In run_pipeline(pipeline_filename, image_dict) > 1 workspace = run_pipeline(pipeline_filename, images) I am using the sample notebook cellprofiler_demo.ipynb at and modifying it to run my pipeline.ĪttributeError Traceback (most recent call last) What am I doing wrong? Any help will be appreciated. Whenever I try to run the pipeline which ran fine on my Mac OS, I get the following error. The pip freeze and java versions are given below. I then exported the pipeline file and copied it over to a Conda environment on a Ubuntu machine that has cellprofiler installed. It runs fine on a sample set of images and produces the desired output. I created a pipeline using the CellProfiler 3.0.0 app on my Mac OS X.
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